Projects

High-throughput biofilm phenotyping

Automated imaging and feature extraction for large bacterial mutant libraries.

Evolutionary modeling of the impact of spatial structure on antibiotic resistance

Stochastic and deterministic models of adaptation under stress.

Characterizing the role of an unknown transcription factor in Pseudomonas aeruginosa

Molecular genetics, microbiology, and bioinformatics to uncover the role of a probable transcription factor. Undergraduate thesis research.

Predicting the evolutionary stability of synonymous mutations

Combining experimental DMS results in yeast to predict fitness effects of synonymous and nonsynonymous mutations. Computational Genomics class project.

Probing chirality and its latent space organization in E(3)-equivariant Boltzmann generators for alanine dipeptide

Investigating chirality-related artifacts in E(3)-equivariant BG-generated samples. Computational Structural Biology class project.